STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2267Putative keto/oxoacid ferredoxin oxidoreductase, alpha subunit; Identified by similarity to GB:BAB21494.1; match to protein family HMM PF01855; match to protein family HMM TIGR03710. (610 aa)    
Predicted Functional Partners:
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by similarity to GB:CAA70873.1; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02175; match to protein family HMM TIGR02176.
  
 0.999
PRU_2268
Putative keto/oxoacid ferredoxin oxidoreductase, beta subunit; Identified by similarity to GB:BAB21495.1; match to protein family HMM PF02775.
 
 0.999
PRU_1149
Putative keto/oxoacid ferredoxin oxidoreductase, alpha subunit; Identified by similarity to GB:AAC38211.1; match to protein family HMM PF01855; match to protein family HMM PF02780.
 
0.954
PRU_1150
Putative ferridoxin oxidoreductase, 4Fe-4S binding subunit; Identified by similarity to GB:AAC38210.1; match to protein family HMM PF00037.
  
 0.952
PRU_0254
Putative pyruvate carboxylase; Identified by similarity to SP:Q58628; match to protein family HMM PF00682.
  
 
 0.946
PRU_1147
Keto/oxoacid ferredoxin oxidoreductase, gamma subunit; Identified by match to protein family HMM PF01558.
  
 0.946
pta
Phosphate acetyltransferase; Identified by similarity to SP:P39646; match to protein family HMM PF01515; match to protein family HMM TIGR00651.
    
 0.942
mutB
methylmalonyl-CoA mutase, large subunit; Identified by similarity to SP:Q05065; match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641.
    
 0.939
mutA
methylmalonyl-CoA mutase, small subunit; Identified by match to protein family HMM PF01642; match to protein family HMM TIGR00642.
    
 0.939
PRU_2205
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
  
 
 0.937
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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