STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2271Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF00532. (547 aa)    
Predicted Functional Partners:
PRU_0680
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
 0.987
PRU_1349
Sensor histindine kinase/DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
0.932
PRU_2273
Putative lipoprotein; Identified by match to protein family HMM PF07980.
 
   
 0.749
PRU_1619
Response regulator; Identified by match to protein family HMM PF00072.
  
 
 0.742
PRU_2272
Conserved hypothetical protein; Identified by similarity to GB:AAO76870.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
 
  
 0.704
PRU_2270
Putative uracil phosphoribosyltransferase; Identified by similarity to SP:P25532; match to protein family HMM PF00156.
 
    0.679
PRU_2276
Fructan beta-(2,6)-fructosidase; Identified by similarity to GB:AAA22924.1; match to protein family HMM PF00251; match to protein family HMM PF08244; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.601
PRU_2275
Glycosyl hydrolase, family 32; Identified by match to protein family HMM PF00251.
 
  
 0.598
PRU_2732
Sensor histidine kinase/DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495.
 
0.583
PRU_2764
Putative transcriptional regulator; Identified by match to protein family HMM PF00532.
 
  
 0.570
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.