STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PRU_2273Putative lipoprotein; Identified by match to protein family HMM PF07980. (583 aa)    
Predicted Functional Partners:
PRU_2275
Glycosyl hydrolase, family 32; Identified by match to protein family HMM PF00251.
 
 
 0.982
PRU_2274
Putative lipoprotein.
  
 
 0.947
PRU_2272
Conserved hypothetical protein; Identified by similarity to GB:AAO76870.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.917
PRU_2276
Fructan beta-(2,6)-fructosidase; Identified by similarity to GB:AAA22924.1; match to protein family HMM PF00251; match to protein family HMM PF08244; Belongs to the glycosyl hydrolase 32 family.
 
 
 0.848
PRU_2681
Outer membrane protein SusC; Identified by similarity to GB:AAA95938.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
 
 0.807
PRU_0154
TonB dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
 
 0.776
PRU_2271
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF00532.
 
   
 0.749
PRU_2518
Putative lipoprotein.
  
 
 0.731
PRU_2589
Conserved hypothetical protein.
  
     0.716
PRU_1462
Putative outer membrane protein SusC; Identified by similarity to GB:AAA95938.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
 
   0.715
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.