Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2283Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244. (900 aa)    
Predicted Functional Partners:
PRU_1355
Putative lipoprotein; Identified by similarity to GB:AAQ66305.1; match to protein family HMM TIGR03302.
 
 
 0.980
PRU_0862
Conserved hypothetical protein; Identified by similarity to GB:AAQ65647.1.
  
 
 
 0.967
PRU_2284
Identified by match to protein family HMM PF03938.
 
  
 0.952
PRU_2280
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
  
 
 0.907
PRU_2877
Putative FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase; Identified by similarity to SP:P51752; match to protein family HMM PF00254.
   
 
 0.892
PRU_0993
Putative lipoprotein.
    
   0.886
PRU_2285
Identified by match to protein family HMM PF03938.
 
  
 0.857
PRU_2281
Conserved hypothetical protein; Identified by similarity to GB:AAQ65423.1.
 
 
 
 0.815
PRU_0034
Peptidylprolyl isomerase domain protein; Identified by match to protein family HMM PF00639; match to protein family HMM PF09312.
 
 
 0.814
fabZ
UDP-3-0-acyl N-acetylglucosamine deacetylase/beta-hydroxyacyl-(acyl-carrier-protein) dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.807
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.