Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PRU_2285Identified by match to protein family HMM PF03938. (167 aa)    
Predicted Functional Partners:
PRU_2283
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
 
  
 0.857
PRU_2286
Conserved hypothetical protein; Identified by similarity to GB:CAE79375.1; match to protein family HMM PF03938.
      
0.751
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.751
PRU_2280
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
 
  
 0.747
PRU_2281
Conserved hypothetical protein; Identified by similarity to GB:AAQ65423.1.
 
 
 
 0.745
PRU_2284
Identified by match to protein family HMM PF03938.
 
   
0.736
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.647
PRU_0795
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
 
  
 0.568
PRU_0035
Conserved hypothetical protein; Identified by similarity to GB:AAQ65615.1.
  
    0.492
PRU_0300
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
 
  
 0.479
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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