STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2285Identified by match to protein family HMM PF03938. (167 aa)    
Predicted Functional Partners:
PRU_2283
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
 
  
 0.874
PRU_2281
Conserved hypothetical protein; Identified by similarity to GB:AAQ65423.1.
 
 
 
 0.820
PRU_2286
Conserved hypothetical protein; Identified by similarity to GB:CAE79375.1; match to protein family HMM PF03938.
      
0.783
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.783
PRU_2280
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
 
  
 0.777
PRU_2284
Identified by match to protein family HMM PF03938.
 
    
0.770
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.691
PRU_0795
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
 
  
 0.567
PRU_0035
Conserved hypothetical protein; Identified by similarity to GB:AAQ65615.1.
  
    0.489
PRU_0202
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
  
 0.487
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.