Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2286Conserved hypothetical protein; Identified by similarity to GB:CAE79375.1; match to protein family HMM PF03938. (171 aa)    
Predicted Functional Partners:
PRU_2280
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
 
  
 0.922
PRU_1450
Conserved hypothetical protein; Identified by similarity to GB:AAQ67102.1.
  
 
 
 0.826
PRU_2281
Conserved hypothetical protein; Identified by similarity to GB:AAQ65423.1.
 
 
 
 0.824
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.824
PRU_2283
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
 
  
 0.801
PRU_0993
Putative lipoprotein.
  
     0.774
PRU_1066
Conserved hypothetical protein; Identified by similarity to GB:AAO75916.1.
  
     0.773
PRU_1861
Conserved hypothetical protein; Identified by similarity to GB:AAO79035.1; match to protein family HMM PF05036.
  
     0.770
PRU_2326
Conserved hypothetical protein; Identified by similarity to GB:AAO78560.1.
  
     0.769
PRU_1359
Conserved hypothetical protein; Identified by similarity to GB:BAD48392.1.
  
     0.767
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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