STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2385Conserved hypothetical protein; Identified by similarity to GB:AAO78177.1; match to protein family HMM PF03061; match to protein family HMM TIGR00051. (132 aa)    
Predicted Functional Partners:
PRU_2386
Hydrolase, haloacid dehalogenase family; Identified by match to protein family HMM PF00702.
  
  
 0.785
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
       0.773
PRU_2384
Glycosyl hydrolase, family 16; Identified by match to protein family HMM PF00722.
       0.773
PRU_2387
Putative transcriptional regulator; Belongs to the Fur family.
  
    0.773
PRU_2388
Mg-chelatase subunits D/I family, ComM subfamily protein; Identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368.
       0.695
PRU_2389
Putative lipoprotein; Identified by similarity to GB:AAO77951.1; match to protein family HMM PF00578.
       0.678
PRU_2390
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
       0.678
PRU_2394
Conserved hypothetical protein; Identified by similarity to GB:AAO78837.1.
 
     0.515
argH
Argininosuccinate lyase; Identified by similarity to SP:P11447; match to protein family HMM PF00206; match to protein family HMM TIGR00838.
       0.435
PRU_2234
Conserved hypothetical protein; Identified by similarity to GB:AAQ65898.1.
 
   
 0.427
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.