STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2425Conserved hypothetical protein; Identified by similarity to GB:AAO75389.1. (463 aa)    
Predicted Functional Partners:
PRU_1889
Conserved domain protein.
  
     0.505
PRU_2424
Conserved domain protein; Identified by similarity to GB:AAC38412.1.
       0.480
PRU_0835
Conserved hypothetical protein; Identified by similarity to GB:AAO76466.1.
  
     0.478
PRU_2901
Putative membrane protein; Identified by similarity to GB:AAO78496.1; match to protein family HMM PF04138.
  
     0.468
PRU_0502
Putative membrane protein; Identified by similarity to GB:AAO76355.1.
  
     0.454
PRU_0155
Putative lipoprotein.
  
     0.436
PRU_2683
Putative lipoprotein.
  
     0.423
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.