STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PRU_2437Glycosyl hydrolase, family 43. (706 aa)    
Predicted Functional Partners:
PRU_1140
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
     0.809
PRU_2440
Glycosyl hydrolase, family 88; Identified by match to protein family HMM PF07470.
 
     0.762
PRU_0511
Glycosyl hydrolase, family 51; Identified by match to protein family HMM PF02018; match to protein family HMM PF06964.
 
  
 0.745
PRU_0524
Glycosyl hydrolase, family 51; Identified by match to protein family HMM PF02018; match to protein family HMM PF06964.
 
  
 0.745
PRU_2606
Putative alpha-N-arabinofuranosidase; Identified by similarity to SP:P82593; match to protein family HMM PF02018; match to protein family HMM PF06964.
 
  
 0.716
PRU_1622
Putative alpha-N-arabinofuranosidase; Identified by similarity to SP:P82593; match to protein family HMM PF02018; match to protein family HMM PF06964.
 
  
 0.715
PRU_0525
alpha-N-arabinofuranosidase; Identified by similarity to SP:P82593; match to protein family HMM PF02018; match to protein family HMM PF06964.
 
  
 0.690
PRU_2602
Conserved domain protein; Identified by similarity to PIR:T36818.
 
  
 0.680
PRU_1592
Conserved hypothetical protein; Identified by similarity to PIR:C69797.
 
   
 0.656
PRU_1571
FG-GAP repeat domain protein; Identified by match to protein family HMM PF01839.
  
  
 0.653
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.