STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2539Putative licD protein; Identified by similarity to GB:AAD37094.1; match to protein family HMM PF04991. (268 aa)    
Predicted Functional Partners:
PRU_2537
Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Identified by similarity to GB:CAA55303.1; match to protein family HMM PF01128.
   
 0.887
PRU_2538
Putative polysaccharide biosynthesis protein; Identified by similarity to GB:AAK70882.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
     0.843
PRU_2536
Polysaccharide biosynthesis protein; Identified by similarity to SP:O32273; match to protein family HMM PF01943.
 
   
 0.822
PRU_2540
Conserved hypothetical protein; Identified by similarity to PIR:AE2359.
 
     0.809
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.747
PRU_2534
Conserved hypothetical protein; Identified by similarity to GB:AAO75430.1.
       0.499
PRU_2533
Conserved hypothetical protein; Identified by similarity to GB:AAO75431.1.
       0.484
PRU_1630
Identified by match to protein family HMM PF01757.
 
     0.457
PRU_0087
Hemolysin erythrocyte lysis protein 2; Identified by similarity to GB:AAC05838.1; match to protein family HMM PF00155.
 
     0.445
PRU_0129
Putative kinase; Identified by match to protein family HMM PF00288; match to protein family HMM PF07959; match to protein family HMM PF08544.
 
     0.439
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.