STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2549Conserved hypothetical protein; Identified by similarity to GB:AAO79849.1; match to protein family HMM PF00328. (416 aa)    
Predicted Functional Partners:
PRU_0908
Prophage PRU01, putative membrane protein; Identified by similarity to GB:AAO79424.1.
  
     0.730
PRU_0204
Sensor histidine kinase; Identified by match to protein family HMM PF02518.
  
     0.635
PRU_0376
Hypothetical protein; Identified by glimmer; putative.
  
     0.626
PRU_0377
Hypothetical protein; Identified by glimmer; putative.
  
     0.625
PRU_1208
Conserved hypothetical protein; Identified by similarity to GB:AAO76791.1.
  
     0.623
PRU_1265
Conserved hypothetical protein; Identified by similarity to GB:BAD50015.1; match to protein family HMM PF07396.
  
     0.596
PRU_2472
Conserved hypothetical protein; Identified by similarity to GB:AAO76584.1.
 
     0.593
PRU_1962
Hypothetical protein; Identified by glimmer; putative.
  
     0.582
PRU_0452
Putative polysaccharide biosynthesis protein; Identified by similarity to SP:Q8X7P7; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.
  
     0.557
PRU_1755
NAD dependent epimerase/dehydratase family protein; Identified by similarity to SP:Q8X7P7; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
  
     0.551
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.