STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2575Conserved domain protein; Identified by similarity to PIR:A97192. (404 aa)    
Predicted Functional Partners:
PRU_2576
Conserved hypothetical protein; Identified by similarity to GB:AAO79610.1.
       0.762
PRU_2577
FMN reductase, NADPH-dependent domain protein; Identified by match to protein family HMM PF02525; match to protein family HMM PF03358.
       0.672
PRU_0852
Conserved hypothetical protein; Identified by similarity to GB:AAS96205.1.
 
  
 0.613
PRU_2578
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.612
PRU_0364
Conserved hypothetical protein; Identified by similarity to GB:AAS95986.1.
 
  
 0.604
PRU_0650
Conserved hypothetical protein; Identified by similarity to GB:AAS95986.1.
 
  
 0.599
PRU_2124
Conserved hypothetical protein; Identified by similarity to GB:AAO75165.1.
  
     0.591
thiS
Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683.
 
     0.558
PRU_1322
Putative addiction module killer protein; Identified by match to protein family HMM PF05015.
  
     0.539
PRU_0962
Conserved hypothetical protein; Identified by similarity to GB:CAC45623.1; match to protein family HMM PF05015.
  
     0.519
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.