Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PRU_2579Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243. (139 aa)    
Predicted Functional Partners:
PRU_2581
Identified by match to protein family HMM PF00903; match to protein family HMM PF01965.
 
  
 0.825
PRU_1044
Hydrolase domain protein; Identified by similarity to SP:P54965; match to protein family HMM PF02275; match to protein family HMM PF03417.
  
     0.724
PRU_2580
Conserved hypothetical protein; Identified by similarity to GB:AAT31984.1.
       0.723
PRU_2578
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
     0.546
PRU_1504
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
     0.492
PRU_1296
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
 
     0.469
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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