STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2610Transporter, outer membrane receptor (OMR) family; Identified by similarity to GB:AAA95938.1; match to protein family HMM PF00593; match to protein family HMM PF07715. (989 aa)    
Predicted Functional Partners:
PRU_2611
Putative lipoprotein; Identified by match to protein family HMM PF07980.
 
     0.928
PRU_2828
Lipoprotein, putative; Identified by match to protein family HMM PF07980.
 
 
   0.822
PRU_1951
Putative lipoprotein; Identified by match to protein family HMM PF07980.
 
 
   0.794
PRU_1463
Conserved hypothetical protein; Identified by similarity to GB:AAC97593.1; match to protein family HMM PF07980.
 
 
   0.787
PRU_2224
Putative lipoprotein; Identified by match to protein family HMM PF07980.
 
 
   0.770
PRU_2696
Putative lipoprotein; Identified by match to protein family HMM PF07980.
 
 
   0.769
PRU_2703
Conserved hypothetical protein; Identified by similarity to GB:AAO78131.1; match to protein family HMM PF07980.
 
 
   0.764
PRU_1676
Putative lipoprotein; Identified by match to protein family HMM PF07980.
 
 
   0.763
PRU_2713
Putative lipoprotein; Identified by match to protein family HMM PF07980.
 
 
   0.759
PRU_0273
Putative lipoprotein; Identified by match to protein family HMM PF07980.
 
     0.756
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.