STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2649Conserved hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. (707 aa)    
Predicted Functional Partners:
PRU_2650
Polysaccharide biosynthesis protein; Identified by similarity to GB:AAC69533.1; match to protein family HMM PF01943.
  
    0.852
PRU_2651
Spore maturation protein AB-like protein; Identified by similarity to SP:P35157; similarity to SP:P35158; match to protein family HMM PF07670.
       0.848
PRU_1806
Peptidase, S9B (dipeptidyl-peptidase IV) subfamily; Identified by similarity to GB:BAA11872.1; match to protein family HMM PF00326; match to protein family HMM PF00930.
 
   
 0.749
PRU_2843
Conserved hypothetical protein.
 
     0.579
PRU_0634
Dipeptidyl-peptidase IV; Identified by similarity to GB:BAA28265.1; match to protein family HMM PF00326; match to protein family HMM PF00930; match to protein family HMM PF02129.
 
   
 0.570
PRU_0556
Peptidase, C1 (papain) family; Identified by similarity to GB:AAA25250.1; match to protein family HMM PF03051; Belongs to the peptidase C1 family.
  
     0.550
PRU_1443
Peptidase, S9C (acylaminoacyl-peptidase) subfamily; Identified by match to protein family HMM PF00326; match to protein family HMM PF07676.
 
   
 0.546
PRU_0118
Peptidase, family M16; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family.
  
     0.438
PRU_0741
Dipeptidase; Identified by match to protein family HMM PF03577.
  
     0.432
PRU_2652
Hypothetical protein; Identified by glimmer; putative.
       0.401
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.