Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PRU_2863Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037. (159 aa)    
Predicted Functional Partners:
PRU_2864
Peptidase, C26 (gamma-glutamyl hydrolase) family/peptidase, M19 (membrane dipeptidase) family; Identified by match to protein family HMM PF00117; match to protein family HMM PF01244; match to protein family HMM PF07722.
       0.824
PRU_2865
Peptidase, M20/M25/M40 family; Identified by match to protein family HMM PF04389.
       0.824
mip
Peptidyl-prolyl cis-trans isomerase Mip; Identified by similarity to SP:P51752; match to protein family HMM PF00254; match to protein family HMM PF01346.
       0.641
PRU_2862
Putative FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase; Identified by similarity to SP:P39311; match to protein family HMM PF00254.
       0.641
fklB
Peptidyl-prolyl cis-trans isomerase, FKBP-type, 22 kDa subunit; Identified by similarity to SP:P39311; match to protein family HMM PF00254; match to protein family HMM PF01346.
       0.529
npdA
NAD-dependent deacetylase; Identified by similarity to SP:P97013; match to protein family HMM PF02146.
  
  
 0.482
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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