STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2872Conserved domain protein. (237 aa)    
Predicted Functional Partners:
PRU_2873
Putative lipoprotein; Identified by match to protein family HMM PF01336.
       0.731
PRU_2569
Conserved hypothetical protein; Identified by similarity to GB:AAO78142.1; match to protein family HMM PF00593.
  
     0.721
PRU_2573
Conserved hypothetical protein; Identified by similarity to GB:AAO78142.1.
  
     0.721
PRU_2589
Conserved hypothetical protein.
  
     0.705
PRU_1208
Conserved hypothetical protein; Identified by similarity to GB:AAO76791.1.
  
     0.666
PRU_2709
Putative lipoprotein; Identified by match to protein family HMM PF07980.
  
     0.596
PRU_2874
DNA/RNA non-specific endonuclease; Identified by match to protein family HMM PF01223.
       0.594
PRU_2275
Glycosyl hydrolase, family 32; Identified by match to protein family HMM PF00251.
  
     0.587
PRU_2875
Conserved hypothetical protein; Identified by similarity to GB:AAO76292.1.
 
    
0.573
PRU_2272
Conserved hypothetical protein; Identified by similarity to GB:AAO76870.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.534
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.