STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Moth_0150Shikimate/quinate 5-dehydrogenase. (360 aa)    
Predicted Functional Partners:
Moth_0149
Conserved hypothetical protein.
     0.991
Moth_1785
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     0.968
argD
Acetylornithine aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
      0.897
Moth_0148
Putative transcriptional regulator.
 
     0.868
Moth_2093
Hypothetical protein.
   
 
 0.867
Moth_0074
Conserved hypothetical protein.
 
     0.772
Moth_1327
Protein of unknown function DUF1614.
  
     0.719
Moth_1326
Stage II sporulation protein P.
  
     0.664
Moth_1549
N-terminal methylation protein.
  
     0.619
greA
GreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.550
Your Current Organism:
Moorella thermoacetica
NCBI taxonomy Id: 264732
Other names: M. thermoacetica ATCC 39073, Moorella thermoacetica ATCC 39073, Moorella thermoacetica str. ATCC 39073, Moorella thermoacetica strain ATCC 39073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.