STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A443HI07Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)    
Predicted Functional Partners:
A0A443HMP6
Putative GTP-binding protein EsdC.
   
 0.999
A0A443HSF0
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
A0A443HSM4
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.999
A0A443I2H1
Sm domain-containing protein.
   
 0.999
A0A443I7P3
Small nuclear ribonucleoprotein G.
   
 0.999
A0A443HLG3
Small nuclear ribonucleoprotein Sm D3.
   
 0.997
A0A443HZP5
U5 small nuclear ribonucleo protein component.
   
 0.997
A0A443I1F0
Small nuclear ribonucleo protein U2, A.
   
 0.997
A0A443HS42
Putative Pre-mRNA splicing factor ini1.
   
 0.996
A0A443HXM1
Nuclear cap-binding protein subunit 2.
   
 0.996
Your Current Organism:
Byssochlamys spectabilis
NCBI taxonomy Id: 264951
Other names: ATCC 90900, B. spectabilis, Byssochlamys spectabilis (Udagawa & Shoji Suzuki) Houbraken & Samson 2008, CBS 101075, FRR 5219, JCM 12815, Pacilomyces variotii, Paecilomyces spectabilis, Paecilomyces variotii, Paecilomyces variotti, Paecilomyces vatiotii, Talaromyces spectabilis
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