STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A443HJT25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1043 aa)    
Predicted Functional Partners:
A0A443HLY0
RAI1 like PD-XK nuclease-domain-containing protein.
   
 
 0.990
A0A443HLJ7
RNA polymerase II-binding domain-containing protein.
    
 
 0.962
A0A443I8C5
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
  
 
0.949
A0A443I5S2
Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 0.802
A0A443HIF4
Armadillo-type protein.
   
  0.801
A0A443HTR3
Putative ribosome biogenesis protein.
   
 
 0.781
A0A443HZF6
Putative rRNA maturation protein.
   
  0.776
A0A443HQ73
Putative rRNA biogenesis protein RRP5.
   
 0.767
A0A443HLC4
U3 small nucleolar RNA-associated protein 10.
   
 
  0.766
A0A443I1Q7
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16.
   
 0.764
Your Current Organism:
Byssochlamys spectabilis
NCBI taxonomy Id: 264951
Other names: ATCC 90900, B. spectabilis, Byssochlamys spectabilis (Udagawa & Shoji Suzuki) Houbraken & Samson 2008, CBS 101075, FRR 5219, JCM 12815, Pacilomyces variotii, Paecilomyces spectabilis, Paecilomyces variotii, Paecilomyces variotti, Paecilomyces vatiotii, Talaromyces spectabilis
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