STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A443HZU7Putative ribosome biogenesis. (719 aa)    
Predicted Functional Partners:
A0A443HZV2
Ribosomal biogenesis protein Gar2.
   
 
 0.990
A0A443I287
Putative pre-rRNA processing protein Rrp12.
   
 
 0.985
A0A443HPG2
Armadillo-type protein.
   
   0.984
A0A443HJB3
Putative nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.981
A0A443HV21
CCAAT-box-binding transcription factor.
   
 
 0.981
A0A443HZC4
Putative nucleolar protein 12.
   
 
 0.981
A0A443I0Y6
ATP-dependent RNA helicase mak5; Belongs to the DEAD box helicase family.
   
 
 0.977
A0A443HIA7
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.976
A0A443HV23
RNA helicase.
   
 
 0.974
A0A443I5P7
Putative ribosome biogenesis protein Ssf2.
   
   0.974
Your Current Organism:
Byssochlamys spectabilis
NCBI taxonomy Id: 264951
Other names: ATCC 90900, B. spectabilis, Byssochlamys spectabilis (Udagawa & Shoji Suzuki) Houbraken & Samson 2008, CBS 101075, FRR 5219, JCM 12815, Pacilomyces variotii, Paecilomyces spectabilis, Paecilomyces variotii, Paecilomyces variotti, Paecilomyces vatiotii, Talaromyces spectabilis
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