STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mfla_0143TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: tbd:Tbd_0532 possible sigma 54 modulation protein/ribosomal protein S30EA; COGs: COG1544 Ribosome-associated protein Y (PSrp-1) category=J. (108 aa)    
Predicted Functional Partners:
rpsU
PFAM: ribosomal protein S21; KEGG: cvi:CV3765 30S ribosomal protein S21; COGs: COG0828 Ribosomal protein S21 category=J; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.922
rpsI
PFAM: ribosomal protein S9; KEGG: eba:ebA937 30S ribosomal protein S9; COGs: COG0103 Ribosomal protein S9 category=J; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.912
rpmA
PFAM: ribosomal protein L27; KEGG: neu:NE1292 ribosomal protein L27; COGs: COG0211 Ribosomal protein L27 category=J; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.912
rpmC
LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.910
rpmH
PFAM: ribosomal protein L34; KEGG: cvi:CV4407 ribosomal protein L34; COGs: COG0230 Ribosomal protein L34 category=J; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.910
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
  
   0.907
rpmG
PFAM: ribosomal protein L33; KEGG: cvi:CV3455 50S ribosomal protein L33; COGs: COG0267 Ribosomal protein L33 category=J; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.906
rpmB
PFAM: ribosomal protein L28; KEGG: tbd:Tbd_2589 ribosomal protein L28; COGs: COG0227 Ribosomal protein L28 category=J; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.906
rpsP
SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.904
rpsE
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.903
Your Current Organism:
Methylobacillus flagellatus
NCBI taxonomy Id: 265072
Other names: M. flagellatus KT, Methylobacillus flagellatus KT, Methylobacillus flagellatus str. KT, Methylobacillus flagellatus strain KT
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.