STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK82628.1Possible MocA-family oxidoreductase. (57 aa)    
Predicted Functional Partners:
GAK85662.1
Aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.844
GAK85670.1
Lipopolysaccharide biosynthesis protein RffA; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.844
cobB
NAD-dependent protein deacetylase; Belongs to the sirtuin family. Class III subfamily.
    
 0.841
GAK85655.1
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.817
GAK82627.1
OsmC/Ohr family protein.
  
    0.773
GAK82629.1
Possible oxidoreductase.
       0.773
GAK82630.1
Putative threonine efflux protein.
       0.773
GAK85261.1
Inositol-1-monophosphatase.
    
 0.758
GAK83941.1
Sugar-1-epimerase YihR.
  
 
 0.749
GAK85497.1
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose.
  
 
 0.720
Your Current Organism:
Vibrio ponticus
NCBI taxonomy Id: 265668
Other names: CCUG 50742, CECT 5869, DSM 16217, V. ponticus, Vibrio ponticus Macian et al. 2005, Vibrio sp. JCM 19238, strain 369
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.