STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK84715.1Putative alpha helix protein; Belongs to the UPF0307 family. (175 aa)    
Predicted Functional Partners:
rpmG
LSU ribosomal protein L33p; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.898
rplX
LSU ribosomal protein L24p; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
  
 
   0.882
GAK85071.1
Ribosomal large subunit pseudouridine synthase D.
    
 
 0.881
GAK85072.1
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
    
 
 0.881
rpmF
LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.
  
 
   0.881
rsfS
Ribosomal silencing factor RsfA; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
    
 
 0.880
obg
GTP-binding protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
    
 
 0.865
rplC
LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
    
   0.864
rplW
LSU ribosomal protein L23p; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
   0.864
rplU
LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.863
Your Current Organism:
Vibrio ponticus
NCBI taxonomy Id: 265668
Other names: CCUG 50742, CECT 5869, DSM 16217, V. ponticus, Vibrio ponticus Macian et al. 2005, Vibrio sp. JCM 19238, strain 369
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.