STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK82722.1Diguanylate cyclase. (52 aa)    
Predicted Functional Partners:
GAK85128.1
Aerobic respiration control sensor protein ArcB.
  
 0.992
GAK85129.1
Aerobic respiration control sensor protein ArcB.
  
 0.992
GAK86729.1
Sensory box histidine kinase.
  
 0.992
GAK86730.1
Sensory box histidine kinase.
  
 0.992
GAK87599.1
Signal transduction histidine kinase.
  
 0.980
GAK87600.1
Signal transduction histidine kinase.
  
 0.980
GAK85399.1
Diguanylate cyclase.
  
 0.977
GAK82646.1
Sensory box sensor histidine kinase.
  
 0.976
GAK82647.1
Sensory box sensor histidine kinase.
  
 0.976
GAK84489.1
Sensory box sensor histidine kinase.
  
 0.976
Your Current Organism:
Vibrio ponticus
NCBI taxonomy Id: 265668
Other names: CCUG 50742, CECT 5869, DSM 16217, V. ponticus, Vibrio ponticus Macian et al. 2005, Vibrio sp. JCM 19238, strain 369
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