Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GAK82738.1 | GAK82739.1 | JCM19238_281 | JCM19238_282 | Hypothetical metal-binding enzyme YcbL homolog. | Exported protein. | 0.836 |
GAK82738.1 | GAK82740.1 | JCM19238_281 | JCM19238_283 | Hypothetical metal-binding enzyme YcbL homolog. | Exported protein. | 0.836 |
GAK82738.1 | GAK83993.1 | JCM19238_281 | JCM19238_1556 | Hypothetical metal-binding enzyme YcbL homolog. | CoA-disulfide reductase. | 0.904 |
GAK82738.1 | GAK83994.1 | JCM19238_281 | JCM19238_1557 | Hypothetical metal-binding enzyme YcbL homolog. | CoA-disulfide reductase. | 0.904 |
GAK82738.1 | GAK83995.1 | JCM19238_281 | JCM19238_1558 | Hypothetical metal-binding enzyme YcbL homolog. | CoA-disulfide reductase. | 0.904 |
GAK82738.1 | GAK86611.1 | JCM19238_281 | JCM19238_4201 | Hypothetical metal-binding enzyme YcbL homolog. | Lactoylglutathione lyase. | 0.780 |
GAK82738.1 | GAK87463.1 | JCM19238_281 | JCM19238_5073 | Hypothetical metal-binding enzyme YcbL homolog. | Lactoylglutathione lyase. | 0.780 |
GAK82738.1 | acpP | JCM19238_281 | JCM19238_5325 | Hypothetical metal-binding enzyme YcbL homolog. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.808 |
GAK82738.1 | thiI | JCM19238_281 | JCM19238_4599 | Hypothetical metal-binding enzyme YcbL homolog. | tRNA S(4)U 4-thiouridine synthase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.876 |
GAK82738.1 | ybeY | JCM19238_281 | JCM19238_504 | Hypothetical metal-binding enzyme YcbL homolog. | Metal-dependent hydrolase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.777 |
GAK82739.1 | GAK82738.1 | JCM19238_282 | JCM19238_281 | Exported protein. | Hypothetical metal-binding enzyme YcbL homolog. | 0.836 |
GAK82739.1 | GAK82740.1 | JCM19238_282 | JCM19238_283 | Exported protein. | Exported protein. | 0.930 |
GAK82740.1 | GAK82738.1 | JCM19238_283 | JCM19238_281 | Exported protein. | Hypothetical metal-binding enzyme YcbL homolog. | 0.836 |
GAK82740.1 | GAK82739.1 | JCM19238_283 | JCM19238_282 | Exported protein. | Exported protein. | 0.930 |
GAK83993.1 | GAK82738.1 | JCM19238_1556 | JCM19238_281 | CoA-disulfide reductase. | Hypothetical metal-binding enzyme YcbL homolog. | 0.904 |
GAK83993.1 | GAK83994.1 | JCM19238_1556 | JCM19238_1557 | CoA-disulfide reductase. | CoA-disulfide reductase. | 0.985 |
GAK83993.1 | GAK83995.1 | JCM19238_1556 | JCM19238_1558 | CoA-disulfide reductase. | CoA-disulfide reductase. | 0.996 |
GAK83993.1 | acpP | JCM19238_1556 | JCM19238_5325 | CoA-disulfide reductase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.716 |
GAK83993.1 | thiI | JCM19238_1556 | JCM19238_4599 | CoA-disulfide reductase. | tRNA S(4)U 4-thiouridine synthase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.814 |
GAK83993.1 | ybeY | JCM19238_1556 | JCM19238_504 | CoA-disulfide reductase. | Metal-dependent hydrolase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.874 |
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