Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAK82823.1Type I restriction-modification system restriction subunit R. (81 aa)    
Predicted Functional Partners:
GAK82822.1
Hypothetical protein.
       0.686
GAK84520.1
Type I restriction-modification system specificity subunit S.
  
  
 0.544
GAK85856.1
Type I restriction-modification system specificity subunit S.
  
  
 0.544
GAK86894.1
Type I restriction-modification system specificity subunit S.
  
  
 0.544
GAK83423.1
Type I restriction-modification system specificity subunit S.
  
  
 0.544
GAK83424.1
HrgA protein.
  
    0.535
GAK83425.1
HrgA protein.
  
    0.535
GAK84521.1
Type I restriction-modification system DNA-methyltransferase subunit M.
  
  
 0.519
GAK84522.1
Type I restriction-modification system DNA-methyltransferase subunit M.
  
  
 0.519
GAK85855.1
Type I restriction-modification system DNA-methyltransferase subunit M.
  
  
 0.519
Your Current Organism:
Vibrio ponticus
NCBI taxonomy Id: 265668
Other names: CCUG 50742, CECT 5869, DSM 16217, V. ponticus, Vibrio ponticus Macian et al. 2005, Vibrio sp. JCM 19238, strain 369
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