STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK86715.1Fimbrial protein pilin. (72 aa)    
Predicted Functional Partners:
GAK84127.1
General secretion pathway protein J.
  
 0.889
GAK86716.1
MSHA pilin protein MshA.
       0.773
GAK84130.1
General secretion pathway protein K.
  
 
 0.690
GAK84131.1
General secretion pathway protein K.
  
 
 0.690
GAK84628.1
Type IV fimbrial assembly.
  
 0.617
GAK85245.1
General secretion pathway protein E.
  
 0.617
GAK85901.1
General secretion pathway protein E.
  
 0.617
GAK85902.1
General secretion pathway protein E.
  
 0.617
GAK86491.1
General secretion pathway protein E.
  
 0.617
GAK83439.1
MSHA biogenesis protein MshE.
  
 0.617
Your Current Organism:
Vibrio ponticus
NCBI taxonomy Id: 265668
Other names: CCUG 50742, CECT 5869, DSM 16217, V. ponticus, Vibrio ponticus Macian et al. 2005, Vibrio sp. JCM 19238, strain 369
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.