STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK86752.1Leucine-responsive regulatory protein. (59 aa)    
Predicted Functional Partners:
GAK86753.1
Xaa-Pro aminopeptidase.
 
 
 
 0.877
GAK86755.1
Xaa-Pro aminopeptidase.
 
 
 
 0.862
GAK86750.1
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.792
birA
Biotin-protein ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
   
 
 0.754
GAK86104.1
PTS system, sucrose-specific IIB component and IIC component.
   
 
  0.696
GAK86105.1
PTS system, sucrose-specific IIB component and IIC component.
   
 
  0.696
GAK86751.1
Succinate-semialdehyde dehydrogenase [NAD(P)+]; Belongs to the aldehyde dehydrogenase family.
  
 
  0.597
GAK84583.1
TRAP-type uncharacterized transport system.
  
     0.517
GAK82758.1
Membrane protein YcjF.
  
     0.412
GAK87717.1
Aminodeoxychorismate lyase.
  
  
 0.408
Your Current Organism:
Vibrio ponticus
NCBI taxonomy Id: 265668
Other names: CCUG 50742, CECT 5869, DSM 16217, V. ponticus, Vibrio ponticus Macian et al. 2005, Vibrio sp. JCM 19238, strain 369
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.