STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK86874.1Xylose activator XylR AraC family. (126 aa)    
Predicted Functional Partners:
GAK86873.1
Xylose activator XylR AraC family.
   
 0.994
GAK85134.1
Glutamate synthase [NADPH] large chain.
   
 0.958
GAK85135.1
Glutamate synthase [NADPH] large chain.
   
 0.958
GAK85136.1
Glutamate synthase [NADPH] large chain.
   
 0.958
GAK85137.1
Glutamate synthase [NADPH] large chain.
   
 0.958
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.906
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
 0.872
xylB
Xylulose kinase.
 
 
 
 0.843
GAK86104.1
PTS system, sucrose-specific IIB component and IIC component.
    
 0.814
GAK86105.1
PTS system, sucrose-specific IIB component and IIC component.
    
 0.814
Your Current Organism:
Vibrio ponticus
NCBI taxonomy Id: 265668
Other names: CCUG 50742, CECT 5869, DSM 16217, V. ponticus, Vibrio ponticus Macian et al. 2005, Vibrio sp. JCM 19238, strain 369
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.