STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK87537.1UPF0043 inner membrane protein YdjZ. (219 aa)    
Predicted Functional Partners:
GAK87536.1
Hypothetical protein.
 
     0.859
GAK87535.1
Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.800
GAK85666.1
Hypothetical protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
  0.720
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
    
  0.711
GAK84788.1
Predicted protein-tyrosine phosphatase.
    
  0.701
GAK84816.1
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
    
  0.696
GAK85341.1
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
    
  0.696
GAK87534.1
cAMP-binding protein.
 
     0.690
GAK83563.1
Putative patatin-like phospholipase.
   
  0.599
GAK85910.1
Phospholipase patatin family.
    
  0.546
Your Current Organism:
Vibrio ponticus
NCBI taxonomy Id: 265668
Other names: CCUG 50742, CECT 5869, DSM 16217, V. ponticus, Vibrio ponticus Macian et al. 2005, Vibrio sp. JCM 19238, strain 369
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.