STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP5553_08419F-box domain-containing protein. (567 aa)    
Predicted Functional Partners:
BP5553_08331
Uncharacterized protein.
    
 0.878
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.672
BP5553_06522
WD repeat protein-like protein.
   
 0.667
BP5553_04450
Ipi1_N domain-containing protein.
   
 0.640
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.622
BP5553_09009
CLP1_P domain-containing protein.
   
  0.590
BP5553_01483
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.585
BP5553_09531
Calponin-homology, CH-domain-containing protein.
    
 0.572
BP5553_00569
CRIB domain-containing protein.
    
 0.572
BP5553_03886
Uncharacterized protein.
    
  0.567
Your Current Organism:
Venustampulla echinocandica
NCBI taxonomy Id: 2656787
Other names: Helotiales sp. QY-2018a, NBRC BP-5553, Phialophora cf. hyalina BP 5553, V. echinocandica, Venustampulla echinocandica Unter., Reblova & Bills, 2019
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.