STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP5553_06969Uncharacterized protein. (393 aa)    
Predicted Functional Partners:
BP5553_07657
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.992
BP5553_01466
RRM domain-containing protein.
   
 
 0.990
BP5553_10220
TPR-like protein.
   
 
 0.989
BP5553_01503
Isy1-like splicing factor.
   
 
 0.989
BP5553_02004
WD40 repeat-like protein.
    
 
 0.989
BP5553_02080
TPR-like protein.
    
 
 0.989
BP5553_05965
RNA recognition-containing protein.
    
 0.988
BP5553_04848
SYF2-domain-containing protein.
    
 
 0.988
BP5553_04029
Putative pre-mRNA processing splicing factor.
    
 
 0.988
BP5553_03175
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.987
Your Current Organism:
Venustampulla echinocandica
NCBI taxonomy Id: 2656787
Other names: Helotiales sp. QY-2018a, NBRC BP-5553, Phialophora cf. hyalina BP 5553, V. echinocandica, Venustampulla echinocandica Unter., Reblova & Bills, 2019
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.