STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP5553_00799RRM domain-containing protein. (319 aa)    
Predicted Functional Partners:
BP5553_09615
Putative pre-mRNA-splicing factor cwc26.
   
 0.996
BP5553_09032
FHA domain-containing protein.
   
 0.996
BP5553_07638
ARM repeat-containing protein.
    
 
 0.988
BP5553_10059
Uncharacterized protein.
    
 
 0.986
BP5553_08333
Splicing factor 3b.
    
 
 0.986
BP5553_00381
CPSF_A domain-containing protein.
    
 
 0.985
BP5553_06957
RNA-binding, RBD.
    
 
 0.984
BP5553_06013
Sec63-domain-containing protein.
    
 
 0.983
BP5553_03873
Uncharacterized protein.
    
   0.981
BP5553_06969
Uncharacterized protein.
    
 
 0.963
Your Current Organism:
Venustampulla echinocandica
NCBI taxonomy Id: 2656787
Other names: Helotiales sp. QY-2018a, NBRC BP-5553, Phialophora cf. hyalina BP 5553, V. echinocandica, Venustampulla echinocandica Unter., Reblova & Bills, 2019
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.