STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP5553_01946HMG box domain-containing protein. (314 aa)    
Predicted Functional Partners:
BP5553_03719
Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.
    
 0.818
BP5553_10060
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
    
 0.814
BP5553_01112
Uncharacterized protein.
    
 0.806
BP5553_08289
Histone H2A; Belongs to the histone H2A family.
   
 0.805
BP5553_04754
Uncharacterized protein.
    
 0.791
BP5553_00291
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.790
BP5553_09657
Uncharacterized protein; Belongs to the actin family.
    
 0.783
BP5553_08728
Putative actin; Belongs to the actin family.
   
 0.782
BP5553_01868
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.776
BP5553_04981
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
    
 0.764
Your Current Organism:
Venustampulla echinocandica
NCBI taxonomy Id: 2656787
Other names: Helotiales sp. QY-2018a, NBRC BP-5553, Phialophora cf. hyalina BP 5553, V. echinocandica, Venustampulla echinocandica Unter., Reblova & Bills, 2019
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.