STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msbAATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (599 aa)    
Predicted Functional Partners:
SDD74704.1
Colicin V processing peptidase. Cysteine peptidase. MEROPS family C39.
 
 
0.937
lpxK
lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
  
 0.895
SDD16171.1
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
   
   0.856
SDD16994.1
ATP-binding cassette, subfamily B.
  
 
0.844
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase); Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
 
     0.837
SDD16045.1
Biopolymer transport protein ExbB.
 
     0.818
SDD16076.1
Biopolymer transport protein ExbD.
       0.800
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.735
SDD16198.1
Peroxiredoxin.
   
  0.731
SDD53182.1
ABC-2 type transport system ATP-binding protein.
 
  
0.716
Your Current Organism:
Aquimonas voraii
NCBI taxonomy Id: 265719
Other names: A. voraii, Aquimonas voraii Saha et al. 2005, DSM 16957, JCM 12896, MTCC 6713, strain GPTSA 20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.