Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDD09655.1 | SDD47567.1 | SAMN04488509_101183 | SAMN04488509_102605 | PAS domain S-box-containing protein. | 3-hydroxyacyl-CoA dehydrogenase. | 0.986 |
SDD09655.1 | SDD47601.1 | SAMN04488509_101183 | SAMN04488509_102606 | PAS domain S-box-containing protein. | Transcriptional regulator, TetR family. | 0.422 |
SDD09655.1 | SDE10727.1 | SAMN04488509_101183 | SAMN04488509_1209 | PAS domain S-box-containing protein. | Na+/proline symporter. | 0.999 |
SDD09655.1 | ndk | SAMN04488509_101183 | SAMN04488509_102607 | PAS domain S-box-containing protein. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.854 |
SDD47567.1 | SDD09655.1 | SAMN04488509_102605 | SAMN04488509_101183 | 3-hydroxyacyl-CoA dehydrogenase. | PAS domain S-box-containing protein. | 0.986 |
SDD47567.1 | SDD47601.1 | SAMN04488509_102605 | SAMN04488509_102606 | 3-hydroxyacyl-CoA dehydrogenase. | Transcriptional regulator, TetR family. | 0.739 |
SDD47567.1 | SDE10727.1 | SAMN04488509_102605 | SAMN04488509_1209 | 3-hydroxyacyl-CoA dehydrogenase. | Na+/proline symporter. | 0.872 |
SDD47567.1 | ndk | SAMN04488509_102605 | SAMN04488509_102607 | 3-hydroxyacyl-CoA dehydrogenase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.519 |
SDD47601.1 | SDD09655.1 | SAMN04488509_102606 | SAMN04488509_101183 | Transcriptional regulator, TetR family. | PAS domain S-box-containing protein. | 0.422 |
SDD47601.1 | SDD47567.1 | SAMN04488509_102606 | SAMN04488509_102605 | Transcriptional regulator, TetR family. | 3-hydroxyacyl-CoA dehydrogenase. | 0.739 |
SDD47601.1 | SDD47700.1 | SAMN04488509_102606 | SAMN04488509_102610 | Transcriptional regulator, TetR family. | Cytoskeleton protein RodZ. | 0.436 |
SDD47601.1 | SDE10727.1 | SAMN04488509_102606 | SAMN04488509_1209 | Transcriptional regulator, TetR family. | Na+/proline symporter. | 0.519 |
SDD47601.1 | ndk | SAMN04488509_102606 | SAMN04488509_102607 | Transcriptional regulator, TetR family. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.588 |
SDD47601.1 | pth | SAMN04488509_102606 | SAMN04488509_109120 | Transcriptional regulator, TetR family. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.439 |
SDD47601.1 | rlmN | SAMN04488509_102606 | SAMN04488509_102608 | Transcriptional regulator, TetR family. | 23S rRNA m(2)A-2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.436 |
SDD47700.1 | SDD47601.1 | SAMN04488509_102610 | SAMN04488509_102606 | Cytoskeleton protein RodZ. | Transcriptional regulator, TetR family. | 0.436 |
SDD47700.1 | ndk | SAMN04488509_102610 | SAMN04488509_102607 | Cytoskeleton protein RodZ. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.716 |
SDD47700.1 | rlmN | SAMN04488509_102610 | SAMN04488509_102608 | Cytoskeleton protein RodZ. | 23S rRNA m(2)A-2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.805 |
SDE10727.1 | SDD09655.1 | SAMN04488509_1209 | SAMN04488509_101183 | Na+/proline symporter. | PAS domain S-box-containing protein. | 0.999 |
SDE10727.1 | SDD47567.1 | SAMN04488509_1209 | SAMN04488509_102605 | Na+/proline symporter. | 3-hydroxyacyl-CoA dehydrogenase. | 0.872 |
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