STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD62153.1Hypothetical protein. (222 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
    0.978
xerC
Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
    0.919
SDD62107.1
Hypothetical protein.
       0.773
SDD62082.1
Uncharacterized conserved protein.
       0.750
SDE00285.1
MJ0042 family finger-like domain-containing protein.
  
    0.690
SDD95475.1
ABC-type uncharacterized transport system, permease component.
  
     0.626
SDD14157.1
DNA polymerase III, delta subunit.
  
     0.613
SDD21067.1
Outer membrane transport energization protein TonB.
  
     0.583
SDD76169.1
HemY protein.
 
     0.571
SDD65608.1
Ubiquinone biosynthesis protein UbiJ.
 
    0.568
Your Current Organism:
Aquimonas voraii
NCBI taxonomy Id: 265719
Other names: A. voraii, Aquimonas voraii Saha et al. 2005, DSM 16957, JCM 12896, MTCC 6713, strain GPTSA 20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.