SDD82756.1 protein (Aquimonas voraii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDD82756.1

Acyl homoserine lactone synthase. (205 aa)

Predicted Functional Partners:

SDD82717.1

0.923

SDD88010.1

0.710

SDE12628.1

0.700

SDD78576.1

0.681

SDD52269.1

0.674

SDD70108.1

0.674

SDD08369.1

0.671

SDD52378.1

0.671

SDD37217.1

0.669

SDD53701.1

0.669

Your Current Organism:

Aquimonas voraii

NCBI taxonomy Id: 265719
Other names: A. voraii, Aquimonas voraii Saha et al. 2005, DSM 16957, JCM 12896, MTCC 6713, strain GPTSA 20

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDD08369.1	SDD37217.1	SAMN04488509_101112	SAMN04488509_102201	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.920
SDD08369.1	SDD52269.1	SAMN04488509_101112	SAMN04488509_10353	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.993
SDD08369.1	SDD52378.1	SAMN04488509_101112	SAMN04488509_10358	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.978
SDD08369.1	SDD53701.1	SAMN04488509_101112	SAMN04488509_103118	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.922
SDD08369.1	SDD70108.1	SAMN04488509_101112	SAMN04488509_105198	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.863
SDD08369.1	SDD78576.1	SAMN04488509_101112	SAMN04488509_10730	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.965
SDD08369.1	SDD82717.1	SAMN04488509_101112	SAMN04488509_10817	Diguanylate cyclase (GGDEF) domain-containing protein.	LuxR family transcriptional regulator, quorum sensing-dependent transcriptional regulator.	0.532
SDD08369.1	SDD82756.1	SAMN04488509_101112	SAMN04488509_10818	Diguanylate cyclase (GGDEF) domain-containing protein.	Acyl homoserine lactone synthase.	0.671
SDD08369.1	SDD88010.1	SAMN04488509_101112	SAMN04488509_10992	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.987
SDD08369.1	SDE12628.1	SAMN04488509_101112	SAMN04488509_1239	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.989
SDD37217.1	SDD08369.1	SAMN04488509_102201	SAMN04488509_101112	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.920
SDD37217.1	SDD52269.1	SAMN04488509_102201	SAMN04488509_10353	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.985
SDD37217.1	SDD52378.1	SAMN04488509_102201	SAMN04488509_10358	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.925
SDD37217.1	SDD53701.1	SAMN04488509_102201	SAMN04488509_103118	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.685
SDD37217.1	SDD70108.1	SAMN04488509_102201	SAMN04488509_105198	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.698
SDD37217.1	SDD78576.1	SAMN04488509_102201	SAMN04488509_10730	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.937
SDD37217.1	SDD82756.1	SAMN04488509_102201	SAMN04488509_10818	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Acyl homoserine lactone synthase.	0.669
SDD37217.1	SDD88010.1	SAMN04488509_102201	SAMN04488509_10992	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.945
SDD37217.1	SDE12628.1	SAMN04488509_102201	SAMN04488509_1239	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.980
SDD52269.1	SDD08369.1	SAMN04488509_10353	SAMN04488509_101112	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.993