STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD84006.1AraC-type DNA-binding protein. (291 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.863
SDE03031.1
Glutamate synthase (NADPH) large subunit.
    
  0.753
SDD90045.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
     
 0.731
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
 0.729
SDD40933.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
  
     0.657
SDD70044.1
Transcriptional regulator, AraC family with amidase-like domain.
 
 
 0.636
SDD83987.1
Protein of unknown function.
 
     0.613
SDD09655.1
PAS domain S-box-containing protein.
   
 
 0.558
SDD40322.1
HTH domain-containing protein.
  
     0.548
SDD83536.1
Two-component system, LytT family, sensor histidine kinase AlgZ.
 
  
 0.478
Your Current Organism:
Aquimonas voraii
NCBI taxonomy Id: 265719
Other names: A. voraii, Aquimonas voraii Saha et al. 2005, DSM 16957, JCM 12896, MTCC 6713, strain GPTSA 20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.