STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE05691.1Hypothetical protein. (122 aa)    
Predicted Functional Partners:
SDE05713.1
Hypothetical protein.
       0.671
SDE05734.1
F pilus assembly protein Type-IV secretion system.
       0.671
SDE05663.1
Conjugal transfer pilus assembly protein TraV.
       0.628
SDE05554.1
Conjugal transfer pilus assembly protein TraL.
       0.444
SDE05581.1
TraE protein.
       0.444
SDE05607.1
TraK protein.
       0.444
SDE05636.1
Conjugal transfer pilus assembly protein TraB.
       0.444
Your Current Organism:
Aquimonas voraii
NCBI taxonomy Id: 265719
Other names: A. voraii, Aquimonas voraii Saha et al. 2005, DSM 16957, JCM 12896, MTCC 6713, strain GPTSA 20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.