STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKC99289.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)    
Predicted Functional Partners:
KKD00703.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.787
KKD01203.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.578
KKC99316.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.532
KKC99431.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.523
KKC99202.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
Your Current Organism:
Photobacterium halotolerans
NCBI taxonomy Id: 265726
Other names: CECT 5860, DSM 18316, LMG 22194, LMG:22194, P. halotolerans, Photobacterium halotolerans Rivas et al. 2006, Photobacterium sp. MELD1, strain MACL01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.