STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0042Hypothetical protein. (201 aa)    
Predicted Functional Partners:
Rxyl_0041
PFAM: IstB-like ATP-binding protein; SMART: ATPase; KEGG: bat:BAS3827 hypothetical protein.
       0.779
Rxyl_0044
PFAM: beta-lactamase-like; KEGG: mta:Moth_1254 beta-lactamase-like.
       0.776
Rxyl_0043
PFAM: protein of unknown function DUF1624; KEGG: mma:MM1197 hypothetical protein.
       0.773
Rxyl_0040
PFAM: DnaD and phage-associated region; KEGG: ctc:CTC02142 hypothetical protein.
       0.554
Rxyl_0045
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: tde:TDE1677 single-strand binding protein.
       0.554
Rxyl_0038
KEGG: mma:MM3004 hypothetical protein.
       0.414
Rxyl_0039
PFAM: protein of unknown function DUF407; KEGG: fra:Francci3_2911 enzymatic protein of unknown function.
       0.414
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.