STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0068PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00566 putative sugar ABC transporter, permease protein. (306 aa)    
Predicted Functional Partners:
Rxyl_0067
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00567 probable sugar ABC transporter, permease protein.
 
 0.979
Rxyl_0069
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: ret:RHE_PF00565 putative sugar ABC transporter, substrate-binding protein.
 
 
 0.970
Rxyl_1992
PFAM: ABC transporter related; SMART: ATPase; KEGG: tfu:Tfu_1763 ABC-type sugar transport systems ATPase components; Belongs to the ABC transporter superfamily.
 
 
 0.969
Rxyl_2068
PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: pab:PAB2232 multiple sugar transport system ATP-binding protein.
 
 
 0.968
Rxyl_1989
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gka:GK2121 ABC transporter (permease).
 
 0.911
Rxyl_2069
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00137 putative sugar ABC transporter, permease protein.
 
 0.911
Rxyl_2071
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: tma:TM0418 multiple sugar transport system substrate-binding protein.
  
 
 0.911
Rxyl_0623
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06980 ABC-type sugar transport system, permease component.
 
 0.907
Rxyl_0213
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH1244 putative multiple sugar transport system substrate-binding protein.
 
 0.893
Rxyl_0669
PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH1244 putative multiple sugar transport system substrate-binding protein.
 
 0.892
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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