STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0094Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR response regulator receiver Sigma-70, region 4 type 2; KEGG: fra:Francci3_1039 two component transcriptional regulator, LuxR family. (222 aa)    
Predicted Functional Partners:
Rxyl_0093
Multi-sensor signal transduction histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: sru:SRU_0095 utilizing regulatory protein TutC.
 
 0.956
Rxyl_1268
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: mag:amb3438 sensor protein GacS.
  
 
 0.927
Rxyl_2663
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: cyb:CYB_1640 sensory box histidine kinase/response regulator.
  
 
 0.927
Rxyl_2612
PFAM: GAF ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sth:STH650 two-component system sensor kinase.
 
 
 0.875
Rxyl_2510
Multi-sensor signal transduction histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: gsu:GSU0253 sensory box histidine kinase.
 
 0.847
Rxyl_1551
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO1071 two component system sensor kinase.
 
 
 0.846
Rxyl_0159
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO5454 two-component system sensor kinase.
 
 0.845
Rxyl_2810
Putative signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase, dimerisation and phosphoacceptor region; KEGG: bha:BH1199 two-component sensor histidine kinase.
 
 
 0.845
Rxyl_0704
Histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO6424 two-component system sensor protein.
 
 
 0.844
Rxyl_1953
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: eca:ECA2028 nitrate/nitrite response regulator.
  
     0.774
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.