STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0208Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sma:SAV1619 putative GntR-family transcriptional regulator. (229 aa)    
Predicted Functional Partners:
Rxyl_1700
PFAM: GntR-like; KEGG: bcl:ABC0546 transcriptional regulator.
  
     0.735
Rxyl_0207
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bja:blr2898 putative zinc binding dehydrogenase.
  
    0.549
Rxyl_0206
PFAM: amidohydrolase Amidohydrolase 3; KEGG: reu:Reut_C6231 amidohydrolase:amidohydrolase-like.
       0.520
Rxyl_0209
PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: nar:Saro_2861 vanillate/3-O-methylgallate O-demethylase; Belongs to the GcvT family.
       0.512
Rxyl_0205
PFAM: intradiol ring-cleavage dioxygenase Catechol dioxygenase-like; KEGG: atc:AGR_C_4592 hypothetical protein.
       0.509
Rxyl_0210
KEGG: nfa:nfa21490 hypothetical protein.
       0.456
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.