STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0216PFAM: GCN5-related N-acetyltransferase; KEGG: bcz:BCZK2672 acetyltransferase, GNAT family. (392 aa)    
Predicted Functional Partners:
Rxyl_1520
KEGG: chy:CHY_0402 competence protein; TIGRFAM: Competence protein ComEA helix-hairpin-helix region; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1.
  
    0.664
Rxyl_0099
KEGG: sco:SCO6430 hypothetical protein.
   
  
 0.652
Rxyl_1016
PFAM: protein of unknown function DUF894, DitE major facilitator superfamily MFS_1; KEGG: sma:SAV6301 putative antibiotic transport protein.
   
  
 0.652
Rxyl_0217
PFAM: luciferase-like; KEGG: sme:SMb20100 putative dehydrogenase protein.
       0.519
Rxyl_0218
PFAM: protein of unknown function DUF6, transmembrane; KEGG: bcl:ABC3060 drug/metabolite transporter (DMT) superfamily protein.
       0.519
Rxyl_1455
TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ RNA-binding S4; KEGG: tfu:Tfu_2034 hemolysin A.
      
 0.463
Rxyl_0214
PFAM: GCN5-related N-acetyltransferase; KEGG: sat:SYN_02355 acetyltransferase.
     
 0.453
Rxyl_0215
Vesicle-fusing ATPase; KEGG: afu:AF1297 cell division control protein 48, AAA family (cdc48-1); PFAM: AAA ATPase, central region; SMART: ATPase; Belongs to the AAA ATPase family.
       0.445
Rxyl_0853
Enoyl-[acyl-carrier-protein] reductase (NADH); KEGG: tfu:Tfu_1842 putative enoyl-ACP reductase.
      
 0.424
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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