STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0249PFAM: protein of unknown function DUF81; KEGG: cef:CE0317 hypothetical protein. (267 aa)    
Predicted Functional Partners:
Rxyl_0250
Signal peptidase I. Serine peptidase. MEROPS family S26A; KEGG: ana:alr2975 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S26 family.
       0.661
Rxyl_1619
PFAM: beta-lactamase-like Rhodanese-like; KEGG: cgb:cg0071 metallo-beta-lactamase superfamily.
 
  
 0.631
Rxyl_1826
PFAM: beta-lactamase-like Rhodanese-like; KEGG: gsu:GSU2309 metallo-beta-lactamase family protein.
 
   
 0.616
Rxyl_0248
PFAM: protein of unknown function DUF81; KEGG: tfu:Tfu_3084 conserved hypothetical membrane permease protein.
 
    
0.607
Rxyl_0245
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A2907 enoyl-CoA hydratase/isomerase.
       0.536
Rxyl_0246
KEGG: tfu:Tfu_0193 similar to carbonic anhydrase/acetyltransferase isoleucine patch superfamily.
       0.536
Rxyl_0241
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Uncharacterized protein UPF0065; KEGG: bja:blr4371 hypothetical protein.
       0.526
Rxyl_0242
KEGG: sco:SCO1139 integral membrane protein.
       0.526
Rxyl_0243
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:bll0952 hypothetical protein.
       0.526
Rxyl_0244
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_A2908 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.526
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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