STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0260TIGRFAM: CRISPR-associated protein, TM1791.1; KEGG: afu:AF1862 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Rxyl_0261
TIGRFAM: CRISPR-associated RAMP Cmr4; PFAM: protein of unknown function DUF324; KEGG: pfu:PF1126 hypothetical protein.
 
 
 
 0.995
Rxyl_0263
CRISPR-associated protein, Cmr2 family; TIGRFAM: CRISPR-associated protein Crm2; KEGG: tte:TTE2639 predicted hydrolase of the HD superfamily (permuted catalytic motifs).
 
 
 
 0.995
Rxyl_0259
TIGRFAM: CRISPR-associated protein, TM1791; PFAM: protein of unknown function DUF324; KEGG: tma:TM1791 hypothetical protein.
 
 
 
 0.993
Rxyl_0264
TIGRFAM: CRISPR-associated protein TM1795 family-like; PFAM: protein of unknown function DUF324; KEGG: ttj:TTHB162 hypothetical protein.
 
 
 
 0.975
Rxyl_0262
KEGG: tth:TT_P0116 hypothetical protein.
 
   
 0.957
Rxyl_0265
TIGRFAM: CRISPR-associated protein, TM1812 CRISPR-associated protein DxTHG; KEGG: tma:TM1812 hypothetical protein.
 
     0.928
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.900
Rxyl_0267
TIGRFAM: CRISPR-associated helicase Cas3, core; KEGG: chy:CHY_2154 CRISPR-associated helicase Cas3.
 
     0.883
Rxyl_0269
TIGRFAM: CRISPR-associated protein Csh2; PFAM: CRISPR-associated protein TM1801; KEGG: chy:CHY_2156 CRISPR-associated protein, Csh2 family.
 
     0.881
Rxyl_0268
CRISPR-associated protein, Cas5h family; TIGRFAM: CRISPR-associated protein Cas5; KEGG: chy:CHY_2155 CRISPR-associated protein Cas5, Hmari subtype.
 
   
 0.880
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.