STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0395PFAM: inner-membrane translocator; KEGG: atc:AGR_L_989 sugar ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family. (315 aa)    
Predicted Functional Partners:
Rxyl_0398
KEGG: atc:AGR_L_993 periplasmic sugar binding protein homolog.
 
 0.993
Rxyl_0397
PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_L_992 high affinity ribose transport protein.
 0.992
Rxyl_2603
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll3407 ribose ABC transporter, periplasmic binding protein.
 0.972
Rxyl_3001
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein.
 0.972
Rxyl_0948
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0206 Periplasmic sugar-binding proteins.
 0.971
rbsA1
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.967
rbsA3
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.967
Rxyl_1891
PFAM: ABC transporter related; SMART: ATPase; KEGG: ava:Ava_2172 ABC transporter-like.
 0.958
rbsA2
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.846
Rxyl_1890
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0765 Periplasmic sugar-binding proteins.
 
 
 0.838
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.